Journal of Southern Medical University ›› 2026, Vol. 46 ›› Issue (9): 2078-2090.doi: 10.12122/j.issn.1673-4254.2026.09.08
Wanting SHEN1(
), Yizhe CHEN1(
), Xinyu FU1, Jiatao YUAN1, Jun ZHOU1, Li HUANG2(
), Ning WU2(
)
Received:2026-01-09
Online:2026-09-20
Published:2026-09-30
Contact:
Li HUANG, Ning WU
E-mail:1527214678@qq.com;2322045095@qq.com;12155501@qq.com;1638210715@qq.com
Supported by:Wanting SHEN, Yizhe CHEN, Xinyu FU, Jiatao YUAN, Jun ZHOU, Li HUANG, Ning WU. Miao medicine Sidaxue regulates macrophage polarization and alleviates synovial inflammation in collagen-induced arthritis rats by inhibiting HIF-1α/PDK1-mediated glycolytic reprogramming[J]. Journal of Southern Medical University, 2026, 46(9): 2078-2090.
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URL: https://www.j-smu.com/EN/10.12122/j.issn.1673-4254.2026.09.08
| Primer | Sequences (5' to 3') | |
|---|---|---|
| HK2 | Forward Reverse | GCTGCTGCTGAAGAAGATGG |
| CCAGAGGGAGTCGATGTTGA | ||
| HIF-1α | Forward Reverse | GCTGATTTGTGAGCCTTCTATG |
| TCATCTGTAAGTGGGTCTCGT | ||
| PDK1 | Forward Reverse | ATGGCGTCCGTGGAGAAGTA |
| TCAGTCTTGGCGTAGTCGTT | ||
| GAPDH | Forward Reverse | GAAGCTGGTCATCAACGGGA |
| GGCGGAGATGATGACCCTTT | ||
Tab.1 Primer sequences for RT-qPCR of HK2, HIF-1α, PDK1 and GAPDH
| Primer | Sequences (5' to 3') | |
|---|---|---|
| HK2 | Forward Reverse | GCTGCTGCTGAAGAAGATGG |
| CCAGAGGGAGTCGATGTTGA | ||
| HIF-1α | Forward Reverse | GCTGATTTGTGAGCCTTCTATG |
| TCATCTGTAAGTGGGTCTCGT | ||
| PDK1 | Forward Reverse | ATGGCGTCCGTGGAGAAGTA |
| TCAGTCTTGGCGTAGTCGTT | ||
| GAPDH | Forward Reverse | GAAGCTGGTCATCAACGGGA |
| GGCGGAGATGATGACCCTTT | ||
Fig.1 HE and immunofluorescence staining of the synovial tissues of the rats from each group. A-D: HE staining of the synovial tissues in normal control, CIA model, GTW, SX groups, respectively (Original magnification:×100). E, F: Immunofluorescence staining of M1 macrophages (iNOS, red) and M2 macrophages (CD206, red) (Scale bar=10 μm). G, H: Quantitative analysis of fluorescence intensity ratio of iNOS+ or CD206+ to CD68+ (Mean±SD, n=3). *P<0.05, ***P<0.001 vs normal group; #P<0.05, ##P<0.01, ###P<0.001 vs model group.
| Group | TNF-α | IL-1β | IL-6 | |
|---|---|---|---|---|
| Normal | 30.81±4.56 | 12.14±1.85 | 32.79±4.26 | |
| Model | 62.86±5.68** | 54.52±4.51** | 79.78±5.35** | |
| GTW | 39.82±5.88# | 32.36±3.97# | 42.65±6.31# | |
| SX | 32.62±6.43## | 30.89±2.36## | 33.52±4.54## |
Tab.4 Effect of SX on serum levels of TNF-α, IL-1β, and IL-6 in CIA rats (n=8, Mean±SD)
| Group | TNF-α | IL-1β | IL-6 | |
|---|---|---|---|---|
| Normal | 30.81±4.56 | 12.14±1.85 | 32.79±4.26 | |
| Model | 62.86±5.68** | 54.52±4.51** | 79.78±5.35** | |
| GTW | 39.82±5.88# | 32.36±3.97# | 42.65±6.31# | |
| SX | 32.62±6.43## | 30.89±2.36## | 33.52±4.54## |
Fig.2 Effects of SX on glycolysis in the synovial tissues of CIA rats. *P<0.05, **P<0.01,***P<0.001 vs the normal group; #P<0.05, ##P<0.01, ###P<0.001 vs the model group.
Fig.3 Total ion current chromatograms of blank serum, SX-medicated rat serum, and SX extract in positive ion mode (A, C, E) and negative ion mode (B, D, F).
| Serial number | t (min) | Component | Lon species | Measured value (m/z) | Score |
|---|---|---|---|---|---|
| 1 | 3.32 | Fumaritine | [M+H]+ | 356.15 | 0.99 |
| 2 | 3.46 | Heriguard | [M+H C7H12O6]+ | 163.04 | 0.99 |
| 3 | 3.55 | Procyanidin B2 | [M+H]+ | 579.15 | 0.99 |
| 4 | 3.63 | Magnoflorine | [M]+ | 342.17 | 0.93 |
| 5 | 4.26 | 3-O-Feruloylquinic acid | [M+H]+ | 369.12 | 0.99 |
| 6 | 4.31 | Glu-Thr | [M+H]+ | 249.11 | 0.93 |
| 7 | 5.16 | N-Malonyltryptophan | [M+H]+ | 291.10 | 0.83 |
| 8 | 5.43 | 7-hydroxy-4-(methoxymethyl)coumarin | [M+H]+ | 207.06 | 0.89 |
| 9 | 5.51 | Brutieridin | [M+H C18H28O13]+ | 303.09 | 0.92 |
| 10 | 5.90 | 4-Hydroxy-7-methyl-2-[2-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] oxypropan-2-yl]-2,3-dihydrofuro[3,2-g]chromen-5-one | [M+H]+ | 439.16 | 0.97 |
| 11 | 7.15 | Toddalolactone | [M+H]+ | 309.13 | 1.00 |
| 12 | 7.89 | Visamminol | [M+H]+ | 277.11 | 0.96 |
| 13 | 8.48 | Skimmianine | [M+H]+ | 260.09 | 0.95 |
| 14 | 9.34 | Isopimpinellin | [M+H]+ | 247.06 | 1.00 |
| 15 | 10.01 | Pimpinellin | [M+H]+ | 247.06 | 1.00 |
| 16 | 12.12 | Phellopterin | [M+H]+ | 301.11 | 0.98 |
| 17 | 2.84 | Neochlorogenic acid | [M-H]- | 353.09 | 0.97 |
| 18 | 3.36 | Wikstrol A | [M-H C6H6O3]- | 417.10 | 0.73 |
| 19 | 3.95 | Catechin | [M-H]- | 289.07 | 1.00 |
| 20 | 4.09 | 2-beta-D-Glucopyranosyloxy-4-methoxy-cis-cinnamic acid | [M-H-H2O]- | 337.09 | 0.98 |
| 21 | 4.37 | (-)-Lyoniresinol 9'-O-glucoside | [M-H]- | 581.22 | 0.95 |
| 22 | 4.79 | N-Acetyl-L-phenylalanine | [M-H]- | 206.08 | 0.98 |
| 23 | 5.15 | Asn-Asn | [M-H]- | 245.09 | 0.73 |
| 24 | 5.51 | Hesperidin | [M-H]- | 609.18 | 1.00 |
| 25 | 6.32 | Azelaic acid | [M-H]- | 187.10 | 1.00 |
| 26 | 6.60 | Salicylic acid | [M-H]- | 137.02 | 1.00 |
| 27 | 8.35 | 1-O-[(2beta,3beta,5xi,9xi,18xi)-2,23-Dihydroxy-28,29-dioxo-3- (beta-D-xylopyranosyloxy)olean-12-en-28-yl]-beta-D-glucopyranose | [M-H]- | 825.43 | 0.99 |
| 28 | 10.76 | Mocimycin | [M-H]- | 795.42 | 0.97 |
| 29 | 11.22 | Medicagenic acid 3-O-beta-D-glucoside | [M-H]- | 663.37 | 0.97 |
Tab.5 Results of the analysis of blood-borne components of Sidaxue
| Serial number | t (min) | Component | Lon species | Measured value (m/z) | Score |
|---|---|---|---|---|---|
| 1 | 3.32 | Fumaritine | [M+H]+ | 356.15 | 0.99 |
| 2 | 3.46 | Heriguard | [M+H C7H12O6]+ | 163.04 | 0.99 |
| 3 | 3.55 | Procyanidin B2 | [M+H]+ | 579.15 | 0.99 |
| 4 | 3.63 | Magnoflorine | [M]+ | 342.17 | 0.93 |
| 5 | 4.26 | 3-O-Feruloylquinic acid | [M+H]+ | 369.12 | 0.99 |
| 6 | 4.31 | Glu-Thr | [M+H]+ | 249.11 | 0.93 |
| 7 | 5.16 | N-Malonyltryptophan | [M+H]+ | 291.10 | 0.83 |
| 8 | 5.43 | 7-hydroxy-4-(methoxymethyl)coumarin | [M+H]+ | 207.06 | 0.89 |
| 9 | 5.51 | Brutieridin | [M+H C18H28O13]+ | 303.09 | 0.92 |
| 10 | 5.90 | 4-Hydroxy-7-methyl-2-[2-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] oxypropan-2-yl]-2,3-dihydrofuro[3,2-g]chromen-5-one | [M+H]+ | 439.16 | 0.97 |
| 11 | 7.15 | Toddalolactone | [M+H]+ | 309.13 | 1.00 |
| 12 | 7.89 | Visamminol | [M+H]+ | 277.11 | 0.96 |
| 13 | 8.48 | Skimmianine | [M+H]+ | 260.09 | 0.95 |
| 14 | 9.34 | Isopimpinellin | [M+H]+ | 247.06 | 1.00 |
| 15 | 10.01 | Pimpinellin | [M+H]+ | 247.06 | 1.00 |
| 16 | 12.12 | Phellopterin | [M+H]+ | 301.11 | 0.98 |
| 17 | 2.84 | Neochlorogenic acid | [M-H]- | 353.09 | 0.97 |
| 18 | 3.36 | Wikstrol A | [M-H C6H6O3]- | 417.10 | 0.73 |
| 19 | 3.95 | Catechin | [M-H]- | 289.07 | 1.00 |
| 20 | 4.09 | 2-beta-D-Glucopyranosyloxy-4-methoxy-cis-cinnamic acid | [M-H-H2O]- | 337.09 | 0.98 |
| 21 | 4.37 | (-)-Lyoniresinol 9'-O-glucoside | [M-H]- | 581.22 | 0.95 |
| 22 | 4.79 | N-Acetyl-L-phenylalanine | [M-H]- | 206.08 | 0.98 |
| 23 | 5.15 | Asn-Asn | [M-H]- | 245.09 | 0.73 |
| 24 | 5.51 | Hesperidin | [M-H]- | 609.18 | 1.00 |
| 25 | 6.32 | Azelaic acid | [M-H]- | 187.10 | 1.00 |
| 26 | 6.60 | Salicylic acid | [M-H]- | 137.02 | 1.00 |
| 27 | 8.35 | 1-O-[(2beta,3beta,5xi,9xi,18xi)-2,23-Dihydroxy-28,29-dioxo-3- (beta-D-xylopyranosyloxy)olean-12-en-28-yl]-beta-D-glucopyranose | [M-H]- | 825.43 | 0.99 |
| 28 | 10.76 | Mocimycin | [M-H]- | 795.42 | 0.97 |
| 29 | 11.22 | Medicagenic acid 3-O-beta-D-glucoside | [M-H]- | 663.37 | 0.97 |
Fig.4 Determination of rheumatoid arthritis (RA)-related target genes. A: Principal component analysis (PCA) of samples before batch effect correction. B: PCA after batch effect correction. C: Volcano plot of differentially expressed genes (DEGs) in RA synovium. D: Heatmap of the DEGs. E: Module-Trait Correlation Heatmap by weighted gene co-expression network analysis (WGCNA). F: Intersection analysis of the DEGs and WGCNA key module genes. G: Intersection analysis of the targerts of the blood-entering components of SX, RA core genes,glycolysis, and macrophage polarization targets.
Fig.5 Identification of the core genes associated with RA. A: Performance evaluation of 127 predictive models constructed using 12 classic machine learning algorithms. B: ROC curve of the optimal RF+Stepglm [forward] model. C: Single-gene ROC curve analysis of the 9 core genes.
Fig.6 Results of protein-protein interaction and virtual knockout. A: AlphaFold3 predicts the interaction structure between HIF‑1α and PDK1 proteins. B: Single-cell clustering annotation of human synovial tissue. C: Enrichment analysis of the downstream perturbed genes after virtual knockout of HIF1A. D: Enrichment analysis of downstream perturbed genes after virtual knockout of PDK1.
| Blood-entering component | Vina score for HIF1A(kcal/mol) |
|---|---|
| (-)-Lyoniresinol 9'-O-glucoside | -7.70 |
| 2-beta-D-Glucopyranosyloxy-4-methoxy-cis-cinnamic acid | -6.70 |
| 1-O-[(2beta,3beta,5xi,9xi,18xi)-2,23-Dihydroxy-28,29-dioxo-3-(beta-D-xylopyranosyloxy)olean-12-en-28-yl]-beta-D-glucopyranose | -9.00 |
| 3-O-Feruloylquinic acid | -7.70 |
| 2-(4-Hydroxy-7-methyl-5-oxo-2,3-dihydro-5H-furo[3,2-g]chromen-2-yl)propan-2-yl hexopyranoside | -8.70 |
| Wikstrol A | -8.60 |
| 7-hydroxy-4-(methoxymethyl)coumarin | -6.00 |
| Asn-Asn | -6.30 |
| Azelaic acid | -5.30 |
| Brutieridin | -8.70 |
| Catechin | -7.50 |
| Fumaritine | -7.80 |
| Glu-Thr | -5.80 |
| Heriguard | -7.80 |
| Hesperidin | -9.30 |
| Isopimpinellin | -6.60 |
| Magnoflorine | -8.10 |
| Medicagenic acid 3-O-beta-D-glucoside | -10.10 |
| Mocimycin | -8.90 |
| N-Acetyl-L-phenylalanine | -6.40 |
| Neochlorogenic acid | -7.70 |
| N-Malonyltryptophan | -7.30 |
| Phellopterin | -7.30 |
| Pimpinellin | -6.70 |
| Procyanidin B2 | -8.50 |
| Salicylic acid | -6.30 |
| Skimmianine | -6.60 |
| Toddalolactone | -6.70 |
| Visamminol | -7.30 |
Tab.6 Results of molecular docking
| Blood-entering component | Vina score for HIF1A(kcal/mol) |
|---|---|
| (-)-Lyoniresinol 9'-O-glucoside | -7.70 |
| 2-beta-D-Glucopyranosyloxy-4-methoxy-cis-cinnamic acid | -6.70 |
| 1-O-[(2beta,3beta,5xi,9xi,18xi)-2,23-Dihydroxy-28,29-dioxo-3-(beta-D-xylopyranosyloxy)olean-12-en-28-yl]-beta-D-glucopyranose | -9.00 |
| 3-O-Feruloylquinic acid | -7.70 |
| 2-(4-Hydroxy-7-methyl-5-oxo-2,3-dihydro-5H-furo[3,2-g]chromen-2-yl)propan-2-yl hexopyranoside | -8.70 |
| Wikstrol A | -8.60 |
| 7-hydroxy-4-(methoxymethyl)coumarin | -6.00 |
| Asn-Asn | -6.30 |
| Azelaic acid | -5.30 |
| Brutieridin | -8.70 |
| Catechin | -7.50 |
| Fumaritine | -7.80 |
| Glu-Thr | -5.80 |
| Heriguard | -7.80 |
| Hesperidin | -9.30 |
| Isopimpinellin | -6.60 |
| Magnoflorine | -8.10 |
| Medicagenic acid 3-O-beta-D-glucoside | -10.10 |
| Mocimycin | -8.90 |
| N-Acetyl-L-phenylalanine | -6.40 |
| Neochlorogenic acid | -7.70 |
| N-Malonyltryptophan | -7.30 |
| Phellopterin | -7.30 |
| Pimpinellin | -6.70 |
| Procyanidin B2 | -8.50 |
| Salicylic acid | -6.30 |
| Skimmianine | -6.60 |
| Toddalolactone | -6.70 |
| Visamminol | -7.30 |
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