Journal of Southern Medical University ›› 2024, Vol. 44 ›› Issue (7): 1397-1406.doi: 10.12122/j.issn.1673-4254.2024.07.20
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Jiajin LIU1,2(), Changhong MIAO1,2, Jiankang XU1,2, Weijie YU1,2, Jixin CHEN1,2, Haozhi TANG1,2, Aifeng LIU1,2(
)
Received:
2024-04-21
Online:
2024-07-20
Published:
2024-07-25
Contact:
Aifeng LIU
E-mail:1978493738@qq.com;draifeng@163.com
Supported by:
Jiajin LIU, Changhong MIAO, Jiankang XU, Weijie YU, Jixin CHEN, Haozhi TANG, Aifeng LIU. Causal relationship between gut microbiota and pigmented villonodular synovitis: a Mendelian randomization analysis[J]. Journal of Southern Medical University, 2024, 44(7): 1397-1406.
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URL: https://www.j-smu.com/EN/10.12122/j.issn.1673-4254.2024.07.20
Exposures | SNPs | EA | Beta | SE | P | F |
---|---|---|---|---|---|---|
rs10402491 | C | 0.066170067 | 0.014850954 | 7.58E-06 | 19.85246518 | |
rs11139361 | T | 0.049446281 | 0.011050331 | 4.26E-06 | 20.02242572 | |
rs112040820 | A | 0.054958365 | 0.011708564 | 2.42E-06 | 22.03232553 | |
rs11841382 | G | -0.071812797 | 0.017461974 | 9.58E-06 | 16.91285828 | |
rs11979110 | T | -0.050092357 | 0.010506859 | 1.82E-06 | 22.72987911 | |
rs1205443 | A | 0.0501415 | 0.011215719 | 7.29E-06 | 19.98666826 | |
rs12760724 | A | -0.048456589 | 0.010793397 | 7.27E-06 | 20.15530508 | |
rs13005175 | A | 0.099348285 | 0.021839504 | 8.37E-06 | 20.69355985 | |
rs2159863 | A | -0.058583102 | 0.012874212 | 3.70E-06 | 20.70634355 | |
rs2910921 | T | 0.160302066 | 0.035832011 | 8.42E-06 | 20.01409117 | |
rs3127230 | C | -0.050353667 | 0.011220058 | 6.20E-06 | 20.1405814 | |
rs35524804 | T | -0.060748124 | 0.012521578 | 2.45E-06 | 23.53681074 | |
rs7359994 | T | -0.050314217 | 0.01124817 | 5.36E-06 | 20.0086457 | |
rs79086868 | T | 0.077672344 | 0.016447234 | 3.01E-06 | 22.30216787 | |
rs959845 | C | -0.049366584 | 0.010780126 | 5.17E-06 | 20.97096808 | |
rs9929145 | G | -0.125721183 | 0.024523339 | 2.84E-07 | 26.28195786 | |
rs1107244 | G | 0.075855776 | 0.017118221 | 3.59E-06 | 21.22625881 | |
rs11769002 | G | -0.052879265 | 0.010938851 | 1.45E-06 | 22.22625881 | |
rs11958296 | A | -0.098122204 | 0.021827201 | 9.30E-06 | 23.22625881 | |
rs12990744 | C | -0.077661791 | 0.017298561 | 8.21E-06 | 24.22625881 | |
rs1689282 | A | -0.052006142 | 0.011394196 | 5.28E-06 | 25.22625881 | |
rs2290844 | C | 0.081396908 | 0.019163185 | 9.10E-06 | 26.22625881 | |
rs2450745 | A | -0.080523959 | 0.018470178 | 7.12E-06 | 27.22625881 | |
rs2875322 | T | -0.058094464 | 0.013143238 | 8.78E-06 | 28.22625881 | |
rs34417064 | A | -0.04820195 | 0.010686843 | 7.01E-06 | 29.22625881 | |
rs4810359 | A | -0.065242793 | 0.014615527 | 7.50E-06 | 30.22625881 | |
rs7129639 | C | -0.052495538 | 0.010958377 | 1.78E-06 | 31.22625881 | |
rs8130320 | A | -0.049001972 | 0.01071701 | 4.84E-06 | 32.22625881 | |
rs11155559 | T | 0.095602282 | 0.021296077 | 8.92E-06 | 20.15288845 | |
rs12909713 | C | -0.055071556 | 0.012003894 | 4.95E-06 | 21.04797848 | |
rs13242616 | T | -0.058374651 | 0.012317572 | 2.29E-06 | 22.45941164 | |
rs199035 | G | 0.055949483 | 0.011971558 | 3.00E-06 | 21.84191978 | |
rs2276875 | A | -0.069717565 | 0.013953704 | 4.65E-07 | 24.96349615 | |
rs2428166 | G | -0.165858717 | 0.033730907 | 8.51E-07 | 24.17801066 | |
rs35177866 | A | 0.091712545 | 0.019013343 | 2.95E-06 | 23.26700721 | |
rs62251337 | A | -0.069076268 | 0.014937412 | 4.24E-06 | 21.38488958 | |
rs72684847 | T | -0.114369278 | 0.025387327 | 6.76E-06 | 20.29480136 | |
rs76181748 | C | -0.077855934 | 0.017163996 | 6.78E-06 | 20.57532145 | |
rs77455852 | T | -0.089149084 | 0.019560057 | 3.16E-06 | 20.77272818 | |
rs79795328 | A | -0.081864467 | 0.01764407 | 4.23E-06 | 21.52748687 | |
rs11149971 | C | 0.117604747 | 0.023389975 | 1.04E-06 | 25.28076366 | |
rs115043014 | G | -0.206605438 | 0.043991974 | 5.19E-06 | 22.05649991 | |
rs117001700 | T | 0.196414252 | 0.044112197 | 8.84E-06 | 19.82570402 | |
rs12453000 | C | 0.062533456 | 0.012998711 | 1.26E-06 | 23.14324677 | |
rs16892041 | T | -0.062260496 | 0.014180398 | 8.82E-06 | 19.27739347 | |
rs2788271 | T | -0.057559633 | 0.013349169 | 7.16E-06 | 18.59206247 | |
rs3005511 | A | 0.050108496 | 0.01107676 | 6.19E-06 | 20.46431647 | |
rs4926264 | T | 0.082620681 | 0.017823907 | 5.10E-06 | 21.48679922 | |
rs67794373 | C | 0.060170889 | 0.012344281 | 1.00E-06 | 23.75971668 | |
rs682885 | A | -0.049337611 | 0.010735883 | 4.49E-06 | 21.11935708 | |
rs72973581 | A | 0.125169075 | 0.026540793 | 1.74E-06 | 22.24161383 | |
rs7860714 | A | -0.050217775 | 0.010985269 | 4.09E-06 | 20.89746184 | |
rs10093861 | G | -0.056886893 | 0.012115188 | 3.06E-06 | 22.04774176 | |
rs1254846 | G | 0.105962631 | 0.023250118 | 5.60E-06 | 20.7708918 | |
rs1363769 | T | -0.200628437 | 0.044937217 | 1.58E-06 | 19.93299851 | |
rs2322265 | C | -0.0666305 | 0.014157654 | 5.21E-06 | 22.14948107 | |
rs2862811 | T | 0.056492728 | 0.012173604 | 3.92E-06 | 21.53509309 | |
rs35035870 | T | -0.190615272 | 0.041440269 | 2.62E-06 | 21.15778768 | |
rs3999074 | G | -0.05505865 | 0.012184677 | 6.55E-06 | 20.41846429 | |
rs4452603 | T | 0.060420825 | 0.013596453 | 8.98E-06 | 19.74795143 | |
rs7249113 | G | 0.067948308 | 0.013349587 | 3.72E-07 | 25.90726893 | |
rs72793667 | A | -0.116880798 | 0.024658906 | 1.63E-06 | 22.46667102 | |
rs9308097 | A | 0.05538101 | 0.012365944 | 7.47E-06 | 20.05705626 | |
rs9788306 | C | -0.062803973 | 0.013074422 | 1.39E-06 | 23.07433744 | |
rs12597105 | G | 0.067085456 | 0.014441482 | 4.87E-06 | 21.57909494 | |
rs2820282 | A | -0.059230421 | 0.012591704 | 2.85E-06 | 22.12690276 | |
rs682403 | A | -0.058816059 | 0.01246713 | 2.37E-06 | 22.25660232 | |
rs6958419 | C | -0.058571831 | 0.012499376 | 2.84E-06 | 21.95841235 | |
rs73218807 | G | -0.166210686 | 0.036793834 | 6.43E-06 | 20.40646575 | |
rs7441445 | C | -0.056949974 | 0.012650232 | 6.80E-06 | 20.26702856 | |
rs10495392 | C | -0.082485954 | 0.018719441 | 9.96E-06 | 19.41664775 | |
rs10791168 | A | -0.066462357 | 0.015006876 | 9.76E-06 | 19.61421311 | |
rs10941294 | C | -0.122057405 | 0.026001669 | 2.40E-06 | 22.03564737 | |
rs115777838 | T | -0.188349525 | 0.038664295 | 4.62E-07 | 23.7306081 | |
rs12638134 | T | 0.058254795 | 0.011965732 | 1.21E-06 | 23.70199016 | |
rs34402072 | C | -0.068802318 | 0.015608285 | 9.80E-06 | 19.43102754 | |
rs56105232 | G | 0.139275689 | 0.029913177 | 2.91E-06 | 21.67831635 | |
rs72809222 | T | 0.067177506 | 0.013983796 | 2.41E-06 | 23.07796941 | |
rs853612 | A | -0.05282572 | 0.011936668 | 9.75E-06 | 19.58504711 | |
rs995642 | C | 0.060047967 | 0.012641687 | 1.90E-06 | 22.56246524 |
Tab.1 Characteristics of SNPs associated with 7 gut microbiota related with pigmented villonodular synovitis (PVNS) risk
Exposures | SNPs | EA | Beta | SE | P | F |
---|---|---|---|---|---|---|
rs10402491 | C | 0.066170067 | 0.014850954 | 7.58E-06 | 19.85246518 | |
rs11139361 | T | 0.049446281 | 0.011050331 | 4.26E-06 | 20.02242572 | |
rs112040820 | A | 0.054958365 | 0.011708564 | 2.42E-06 | 22.03232553 | |
rs11841382 | G | -0.071812797 | 0.017461974 | 9.58E-06 | 16.91285828 | |
rs11979110 | T | -0.050092357 | 0.010506859 | 1.82E-06 | 22.72987911 | |
rs1205443 | A | 0.0501415 | 0.011215719 | 7.29E-06 | 19.98666826 | |
rs12760724 | A | -0.048456589 | 0.010793397 | 7.27E-06 | 20.15530508 | |
rs13005175 | A | 0.099348285 | 0.021839504 | 8.37E-06 | 20.69355985 | |
rs2159863 | A | -0.058583102 | 0.012874212 | 3.70E-06 | 20.70634355 | |
rs2910921 | T | 0.160302066 | 0.035832011 | 8.42E-06 | 20.01409117 | |
rs3127230 | C | -0.050353667 | 0.011220058 | 6.20E-06 | 20.1405814 | |
rs35524804 | T | -0.060748124 | 0.012521578 | 2.45E-06 | 23.53681074 | |
rs7359994 | T | -0.050314217 | 0.01124817 | 5.36E-06 | 20.0086457 | |
rs79086868 | T | 0.077672344 | 0.016447234 | 3.01E-06 | 22.30216787 | |
rs959845 | C | -0.049366584 | 0.010780126 | 5.17E-06 | 20.97096808 | |
rs9929145 | G | -0.125721183 | 0.024523339 | 2.84E-07 | 26.28195786 | |
rs1107244 | G | 0.075855776 | 0.017118221 | 3.59E-06 | 21.22625881 | |
rs11769002 | G | -0.052879265 | 0.010938851 | 1.45E-06 | 22.22625881 | |
rs11958296 | A | -0.098122204 | 0.021827201 | 9.30E-06 | 23.22625881 | |
rs12990744 | C | -0.077661791 | 0.017298561 | 8.21E-06 | 24.22625881 | |
rs1689282 | A | -0.052006142 | 0.011394196 | 5.28E-06 | 25.22625881 | |
rs2290844 | C | 0.081396908 | 0.019163185 | 9.10E-06 | 26.22625881 | |
rs2450745 | A | -0.080523959 | 0.018470178 | 7.12E-06 | 27.22625881 | |
rs2875322 | T | -0.058094464 | 0.013143238 | 8.78E-06 | 28.22625881 | |
rs34417064 | A | -0.04820195 | 0.010686843 | 7.01E-06 | 29.22625881 | |
rs4810359 | A | -0.065242793 | 0.014615527 | 7.50E-06 | 30.22625881 | |
rs7129639 | C | -0.052495538 | 0.010958377 | 1.78E-06 | 31.22625881 | |
rs8130320 | A | -0.049001972 | 0.01071701 | 4.84E-06 | 32.22625881 | |
rs11155559 | T | 0.095602282 | 0.021296077 | 8.92E-06 | 20.15288845 | |
rs12909713 | C | -0.055071556 | 0.012003894 | 4.95E-06 | 21.04797848 | |
rs13242616 | T | -0.058374651 | 0.012317572 | 2.29E-06 | 22.45941164 | |
rs199035 | G | 0.055949483 | 0.011971558 | 3.00E-06 | 21.84191978 | |
rs2276875 | A | -0.069717565 | 0.013953704 | 4.65E-07 | 24.96349615 | |
rs2428166 | G | -0.165858717 | 0.033730907 | 8.51E-07 | 24.17801066 | |
rs35177866 | A | 0.091712545 | 0.019013343 | 2.95E-06 | 23.26700721 | |
rs62251337 | A | -0.069076268 | 0.014937412 | 4.24E-06 | 21.38488958 | |
rs72684847 | T | -0.114369278 | 0.025387327 | 6.76E-06 | 20.29480136 | |
rs76181748 | C | -0.077855934 | 0.017163996 | 6.78E-06 | 20.57532145 | |
rs77455852 | T | -0.089149084 | 0.019560057 | 3.16E-06 | 20.77272818 | |
rs79795328 | A | -0.081864467 | 0.01764407 | 4.23E-06 | 21.52748687 | |
rs11149971 | C | 0.117604747 | 0.023389975 | 1.04E-06 | 25.28076366 | |
rs115043014 | G | -0.206605438 | 0.043991974 | 5.19E-06 | 22.05649991 | |
rs117001700 | T | 0.196414252 | 0.044112197 | 8.84E-06 | 19.82570402 | |
rs12453000 | C | 0.062533456 | 0.012998711 | 1.26E-06 | 23.14324677 | |
rs16892041 | T | -0.062260496 | 0.014180398 | 8.82E-06 | 19.27739347 | |
rs2788271 | T | -0.057559633 | 0.013349169 | 7.16E-06 | 18.59206247 | |
rs3005511 | A | 0.050108496 | 0.01107676 | 6.19E-06 | 20.46431647 | |
rs4926264 | T | 0.082620681 | 0.017823907 | 5.10E-06 | 21.48679922 | |
rs67794373 | C | 0.060170889 | 0.012344281 | 1.00E-06 | 23.75971668 | |
rs682885 | A | -0.049337611 | 0.010735883 | 4.49E-06 | 21.11935708 | |
rs72973581 | A | 0.125169075 | 0.026540793 | 1.74E-06 | 22.24161383 | |
rs7860714 | A | -0.050217775 | 0.010985269 | 4.09E-06 | 20.89746184 | |
rs10093861 | G | -0.056886893 | 0.012115188 | 3.06E-06 | 22.04774176 | |
rs1254846 | G | 0.105962631 | 0.023250118 | 5.60E-06 | 20.7708918 | |
rs1363769 | T | -0.200628437 | 0.044937217 | 1.58E-06 | 19.93299851 | |
rs2322265 | C | -0.0666305 | 0.014157654 | 5.21E-06 | 22.14948107 | |
rs2862811 | T | 0.056492728 | 0.012173604 | 3.92E-06 | 21.53509309 | |
rs35035870 | T | -0.190615272 | 0.041440269 | 2.62E-06 | 21.15778768 | |
rs3999074 | G | -0.05505865 | 0.012184677 | 6.55E-06 | 20.41846429 | |
rs4452603 | T | 0.060420825 | 0.013596453 | 8.98E-06 | 19.74795143 | |
rs7249113 | G | 0.067948308 | 0.013349587 | 3.72E-07 | 25.90726893 | |
rs72793667 | A | -0.116880798 | 0.024658906 | 1.63E-06 | 22.46667102 | |
rs9308097 | A | 0.05538101 | 0.012365944 | 7.47E-06 | 20.05705626 | |
rs9788306 | C | -0.062803973 | 0.013074422 | 1.39E-06 | 23.07433744 | |
rs12597105 | G | 0.067085456 | 0.014441482 | 4.87E-06 | 21.57909494 | |
rs2820282 | A | -0.059230421 | 0.012591704 | 2.85E-06 | 22.12690276 | |
rs682403 | A | -0.058816059 | 0.01246713 | 2.37E-06 | 22.25660232 | |
rs6958419 | C | -0.058571831 | 0.012499376 | 2.84E-06 | 21.95841235 | |
rs73218807 | G | -0.166210686 | 0.036793834 | 6.43E-06 | 20.40646575 | |
rs7441445 | C | -0.056949974 | 0.012650232 | 6.80E-06 | 20.26702856 | |
rs10495392 | C | -0.082485954 | 0.018719441 | 9.96E-06 | 19.41664775 | |
rs10791168 | A | -0.066462357 | 0.015006876 | 9.76E-06 | 19.61421311 | |
rs10941294 | C | -0.122057405 | 0.026001669 | 2.40E-06 | 22.03564737 | |
rs115777838 | T | -0.188349525 | 0.038664295 | 4.62E-07 | 23.7306081 | |
rs12638134 | T | 0.058254795 | 0.011965732 | 1.21E-06 | 23.70199016 | |
rs34402072 | C | -0.068802318 | 0.015608285 | 9.80E-06 | 19.43102754 | |
rs56105232 | G | 0.139275689 | 0.029913177 | 2.91E-06 | 21.67831635 | |
rs72809222 | T | 0.067177506 | 0.013983796 | 2.41E-06 | 23.07796941 | |
rs853612 | A | -0.05282572 | 0.011936668 | 9.75E-06 | 19.58504711 | |
rs995642 | C | 0.060047967 | 0.012641687 | 1.90E-06 | 22.56246524 |
Exposures | Method | Beta | OR | 95%CI | P |
---|---|---|---|---|---|
MR Egger | -2.46 | 0.09 | 0.003-2.85 | 0.191 | |
Weighted median | -0.73 | 0.48 | 0.12-1.90 | 0.297 | |
Inverse variance weighted | -1.83 | 0.16 | 0.05-0.53 | 0.003 | |
MR Egger | -4.40 | 0.01 | 0.00004-4.10 | 0.169 | |
Weighted median | -1.69 | 0.18 | 0.04-0.94 | 0.041 | |
Inverse variance weighted | 1.14 | 3.12 | 1.15-8.41 | 0.025 | |
MR Egger | 3.16 | 23.68 | 0.41-1365.64 | 0.157 | |
Weighted median | 1.22 | 3.40 | 0.94-12.28 | 0.061 | |
Inverse variance weighted | -1.61 | 0.20 | 0.06-0.61 | 0.005 | |
MR Egger | -1.11 | 0.33 | 0.02-5.92 | 0.469 | |
Weighted median | -1.12 | 0.33 | 0.07-1.48 | 0.146 | |
Inverse variance weighted | -0.98 | 0.38 | 0.15-0.94 | 0.036 | |
MR Egger | -0.58 | 0.56 | 0.03-9.67 | 0.697 | |
Weighted median | -0.96 | 0.38 | 0.10-1.51 | 0.171 | |
Inverse variance weighted | 1.39 | 4.03 | 1.19-13.68 | 0.025 | |
MR Egger | 1.74 | 5.71 | 0.20-164.23 | 0.367 | |
Weighted median | 1.59 | 4.91 | 1.02-23.68 | 0.047 | |
Inverse variance weighted | -1.02 | 0.36 | 0.14-0.94 | 0.037 | |
MR Egger | -1.07 | 0.34 | 0.04-3.13 | 0.370 | |
Weighted median | -0.73 | 0.48 | 0.12-1.9 | 0.302 |
Tab.2 Main results of Mendelian randomization analysis
Exposures | Method | Beta | OR | 95%CI | P |
---|---|---|---|---|---|
MR Egger | -2.46 | 0.09 | 0.003-2.85 | 0.191 | |
Weighted median | -0.73 | 0.48 | 0.12-1.90 | 0.297 | |
Inverse variance weighted | -1.83 | 0.16 | 0.05-0.53 | 0.003 | |
MR Egger | -4.40 | 0.01 | 0.00004-4.10 | 0.169 | |
Weighted median | -1.69 | 0.18 | 0.04-0.94 | 0.041 | |
Inverse variance weighted | 1.14 | 3.12 | 1.15-8.41 | 0.025 | |
MR Egger | 3.16 | 23.68 | 0.41-1365.64 | 0.157 | |
Weighted median | 1.22 | 3.40 | 0.94-12.28 | 0.061 | |
Inverse variance weighted | -1.61 | 0.20 | 0.06-0.61 | 0.005 | |
MR Egger | -1.11 | 0.33 | 0.02-5.92 | 0.469 | |
Weighted median | -1.12 | 0.33 | 0.07-1.48 | 0.146 | |
Inverse variance weighted | -0.98 | 0.38 | 0.15-0.94 | 0.036 | |
MR Egger | -0.58 | 0.56 | 0.03-9.67 | 0.697 | |
Weighted median | -0.96 | 0.38 | 0.10-1.51 | 0.171 | |
Inverse variance weighted | 1.39 | 4.03 | 1.19-13.68 | 0.025 | |
MR Egger | 1.74 | 5.71 | 0.20-164.23 | 0.367 | |
Weighted median | 1.59 | 4.91 | 1.02-23.68 | 0.047 | |
Inverse variance weighted | -1.02 | 0.36 | 0.14-0.94 | 0.037 | |
MR Egger | -1.07 | 0.34 | 0.04-3.13 | 0.370 | |
Weighted median | -0.73 | 0.48 | 0.12-1.9 | 0.302 |
Exposure | Method | Beta | OR | 95% CI | P |
---|---|---|---|---|---|
Inverse variance weighted | -1.13 | 0.32 | 0.12-0.85 | 0.022 | |
MR Egger | -2.29 | 0.10 | 0.002-4.59 | 0.191 | |
Weighted median | -0.82 | 0.44 | 0.11-1.83 | 0.297 | |
Inverse variance weighted | -1.38 | 0.25 | 0.08-0.76 | 0.014 | |
MR Egger | -4.63 | 0.01 | 0.00003-2.97 | 0.141 | |
Weighted median | -1.96 | 0.14 | 0.03-0.67 | 0.013 | |
Inverse variance weighted | -1.66 | 0.19 | 0.07-0.54 | 0.002 | |
MR Egger | -1.82 | 0.16 | 0.07-1.18 | 0.220 | |
Weighted median | -1.27 | 0.28 | 0.07-1.48 | 0.082 | |
Inverse variance weighted | 1.88 | 6.57 | 2.03-21.27 | 0.002 | |
MR Egger | 1.66 | 5.26 | 0.21-132.01 | 0.370 | |
Weighted median | 1.77 | 5.88 | 1.18-29.37 | 0.031 |
Tab.4 Results of causal analysis of gut microbiota and PVNS (R10)
Exposure | Method | Beta | OR | 95% CI | P |
---|---|---|---|---|---|
Inverse variance weighted | -1.13 | 0.32 | 0.12-0.85 | 0.022 | |
MR Egger | -2.29 | 0.10 | 0.002-4.59 | 0.191 | |
Weighted median | -0.82 | 0.44 | 0.11-1.83 | 0.297 | |
Inverse variance weighted | -1.38 | 0.25 | 0.08-0.76 | 0.014 | |
MR Egger | -4.63 | 0.01 | 0.00003-2.97 | 0.141 | |
Weighted median | -1.96 | 0.14 | 0.03-0.67 | 0.013 | |
Inverse variance weighted | -1.66 | 0.19 | 0.07-0.54 | 0.002 | |
MR Egger | -1.82 | 0.16 | 0.07-1.18 | 0.220 | |
Weighted median | -1.27 | 0.28 | 0.07-1.48 | 0.082 | |
Inverse variance weighted | 1.88 | 6.57 | 2.03-21.27 | 0.002 | |
MR Egger | 1.66 | 5.26 | 0.21-132.01 | 0.370 | |
Weighted median | 1.77 | 5.88 | 1.18-29.37 | 0.031 |
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