Journal of Southern Medical University ›› 2025, Vol. 45 ›› Issue (10): 2210-2222.doi: 10.12122/j.issn.1673-4254.2025.10.17
Jinguo WANG1(
), Yang MA2, Zhaoxin LI3, Lifei HE3, Yingze HUANG4(
), Xiaoming FAN5(
)
Received:2025-04-23
Online:2025-10-20
Published:2025-10-24
Contact:
Yingze HUANG, Xiaoming FAN
E-mail:wangjinguo401@alu.glmc.edu.cn;youshxicun@glmc.edu.cn;fanxiaom1987@ glmc.edu.cn
Jinguo WANG, Yang MA, Zhaoxin LI, Lifei HE, Yingze HUANG, Xiaoming FAN. PDZ-binding kinase as a prognostic biomarker for pancreatic cancer: a pan-cancer analysis and validation in pancreatic adenocarcinoma cells[J]. Journal of Southern Medical University, 2025, 45(10): 2210-2222.
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URL: https://www.j-smu.com/EN/10.12122/j.issn.1673-4254.2025.10.17
| Name | Detail | Tumor (TCGA) | Normal (source) |
|---|---|---|---|
| ACC | Adrenocortical carcinoma | 77 | 77 (adrenal gland, GTEx) |
| BLCA | Bladder urothelial carcinoma | 406 | 19 (TCGA) |
| BRCA | Breast invasive carcinoma | 1085 | 99 (TCGA) |
| CESC | Cervical squamous cell carcinoma and endocervical adenocarcinoma | 306 | 13 (cervix uteri, GTEx) |
| CHOL | Cholangio carcinoma | 36 | 9 (TCGA) |
| COAD | Colon adenocarcinoma | 448 | 41 (TCGA) |
| DLBC | Lymphoid neoplasm diffuse large B-cell lymphoma | 47 | 47 (whole blood, GTEx) |
| ESCA | Esophageal carcinoma | 182 | 13 (TCGA) |
| GBM | Glioblastoma multiforme | 167 | 163 (brain cortex, GTEx) |
| HNSC | Head and neck squamous cell carcinoma | 519 | 44 (TCGA) |
| KICH | Kidney chromophobe | 66 | 25 (TCGA) |
| KIRC | Kidney renal clear cell carcinoma | 531 | 25 (TCGA) |
| KIRP | Kidney renal papillary cell carcinoma | 286 | 32 (TCGA) |
| LAML | Acute myeloid Leukemia | 173 | 173 (whole blood, GTEx) |
| LGG | Brain lower grade glioma | 524 | 255 (brain cortex, GTEx) |
| LIHC | Liver hepatocellular carcinoma | 369 | 50 (TCGA) |
| LUAD | Lung adenocarcinoma | 513 | 59 (TCGA) |
| LUSC | Lung squamous cell carcinoma | 486 | 50 (TCGA) |
| MESO | Mesothelioma | 87 | 87 (heart atrial appendage, GTEx) |
| OV | Ovarian serous cystadenocarcinoma | 426 | 180 (ovary, GTEx) |
| PAAD | Pancreatic adenocarcinoma | 178 | 4 (TCGA) |
| PCPG | Pheochromocytoma and paraganglioma | 183 | 182 (adrenal gland, GTEx) |
| PRAD | Prostate adenocarcinoma | 499 | 52 (TCGA) |
| READ | Rectum adenocarcinoma | 158 | 10 (TCGA) |
| SARC | Sarcoma | 262 | 262 (adipose subcutaneous, GTEx) |
| SKCM | Skin cutaneous melanoma | 461 | 461 (skin sun exposed lower, GTEx) |
| STAD | Stomach adenocarcinoma | 408 | 36 (TCGA) |
| TGCT | Testicular germ cell tumors | 139 | 137 (testis, GTEx) |
| THCA | Thyroid carcinoma | 512 | 59 (TCGA) |
| THYM | Thymoma | 118 | 118 (whole blood, GTEx) |
| UCEC | Uterine corpus endometrial carcinoma | 544 | 35 (TCGA) |
| UCS | Uterine carcinosarcoma | 57 | 57 (uterus, GTEx) |
| UVM | Uveal melanoma | 80 | 79 (EyeGEx retina, GTEx) |
| GSE15471 | 39 (GEO) | 39 (GEO) | |
| GSE16515 | 36 (GEO) | 16 (GEO) | |
| GSE62165 | 118 (GEO) | 13 (GEO) | |
Tab.1 Data of the samples from TCGA, GEO and GTEx
| Name | Detail | Tumor (TCGA) | Normal (source) |
|---|---|---|---|
| ACC | Adrenocortical carcinoma | 77 | 77 (adrenal gland, GTEx) |
| BLCA | Bladder urothelial carcinoma | 406 | 19 (TCGA) |
| BRCA | Breast invasive carcinoma | 1085 | 99 (TCGA) |
| CESC | Cervical squamous cell carcinoma and endocervical adenocarcinoma | 306 | 13 (cervix uteri, GTEx) |
| CHOL | Cholangio carcinoma | 36 | 9 (TCGA) |
| COAD | Colon adenocarcinoma | 448 | 41 (TCGA) |
| DLBC | Lymphoid neoplasm diffuse large B-cell lymphoma | 47 | 47 (whole blood, GTEx) |
| ESCA | Esophageal carcinoma | 182 | 13 (TCGA) |
| GBM | Glioblastoma multiforme | 167 | 163 (brain cortex, GTEx) |
| HNSC | Head and neck squamous cell carcinoma | 519 | 44 (TCGA) |
| KICH | Kidney chromophobe | 66 | 25 (TCGA) |
| KIRC | Kidney renal clear cell carcinoma | 531 | 25 (TCGA) |
| KIRP | Kidney renal papillary cell carcinoma | 286 | 32 (TCGA) |
| LAML | Acute myeloid Leukemia | 173 | 173 (whole blood, GTEx) |
| LGG | Brain lower grade glioma | 524 | 255 (brain cortex, GTEx) |
| LIHC | Liver hepatocellular carcinoma | 369 | 50 (TCGA) |
| LUAD | Lung adenocarcinoma | 513 | 59 (TCGA) |
| LUSC | Lung squamous cell carcinoma | 486 | 50 (TCGA) |
| MESO | Mesothelioma | 87 | 87 (heart atrial appendage, GTEx) |
| OV | Ovarian serous cystadenocarcinoma | 426 | 180 (ovary, GTEx) |
| PAAD | Pancreatic adenocarcinoma | 178 | 4 (TCGA) |
| PCPG | Pheochromocytoma and paraganglioma | 183 | 182 (adrenal gland, GTEx) |
| PRAD | Prostate adenocarcinoma | 499 | 52 (TCGA) |
| READ | Rectum adenocarcinoma | 158 | 10 (TCGA) |
| SARC | Sarcoma | 262 | 262 (adipose subcutaneous, GTEx) |
| SKCM | Skin cutaneous melanoma | 461 | 461 (skin sun exposed lower, GTEx) |
| STAD | Stomach adenocarcinoma | 408 | 36 (TCGA) |
| TGCT | Testicular germ cell tumors | 139 | 137 (testis, GTEx) |
| THCA | Thyroid carcinoma | 512 | 59 (TCGA) |
| THYM | Thymoma | 118 | 118 (whole blood, GTEx) |
| UCEC | Uterine corpus endometrial carcinoma | 544 | 35 (TCGA) |
| UCS | Uterine carcinosarcoma | 57 | 57 (uterus, GTEx) |
| UVM | Uveal melanoma | 80 | 79 (EyeGEx retina, GTEx) |
| GSE15471 | 39 (GEO) | 39 (GEO) | |
| GSE16515 | 36 (GEO) | 16 (GEO) | |
| GSE62165 | 118 (GEO) | 13 (GEO) | |
| Gene name | Sequence | Tm | Amplicon length |
|---|---|---|---|
| PBK | F: TATGACTGCTCCTGCCTTCATAAC | 60 ℃ | 115 |
| R: CACAGCTTCTTTGGGTTTCCAT | |||
| GAPDH | F: TCTCTGCTCCTCCCTGTTC | 60 ℃ | 125 |
| R: ACACCGACCTTCACCATCT |
Tab.2 Primer sequences for RT-qPCR in this study
| Gene name | Sequence | Tm | Amplicon length |
|---|---|---|---|
| PBK | F: TATGACTGCTCCTGCCTTCATAAC | 60 ℃ | 115 |
| R: CACAGCTTCTTTGGGTTTCCAT | |||
| GAPDH | F: TCTCTGCTCCTCCCTGTTC | 60 ℃ | 125 |
| R: ACACCGACCTTCACCATCT |
Fig.1 PBK expression in 33 cancer types. A: Distribution of PBK mRNA expression in 33 cancer types and their normal controls based on TCGA data. B: Protein expression levels of PBK in different cancers based on data from the CPTAC database. C: ROC curve analysis of PBK in 33 cancer types, demonstrating its diagnostic ability to differentiate cancer from normal tissues. ***P<0.001, ****P<0.0001.
Fig.2 PBK expression in pancreatic cancer. A, B: TCGA and CPTAC data show significantly higher expression of PBK in pancreatic cancer tissues than in normal tissues. C-E: Differential expressions of PBK in pancreatic cancer and paired normal samples based on GSE16515, GSE15471 and GSE62165 datasets. F: Clinical feature heat map showing the association of PBK expression with pancreatic ductal adenocarcinoma and its correlation with tumor characteristics. G: ROC curves of the TCGA and GEO datasets further verify the reliability of PBK as a biomarker for diagnosis of pancreatic cancer. ***P<0.001, ****P<0.0001.
Fig.3 PBK is highly expressed in clinical samples and cell lines of pancreatic cancer. A: PBK protein expression levels in 4 clinical pancreatic cancer samples and their paired normal tissues. *P<0.05 vs Normal. B: PBK protein expression levels in normal pancreatic cell line HPDE6-C7 and 4 pancreatic cancer cell lines (PANC-1, AsPC-1, BxPC-3, and SW1990). *P<0.05 vs HPDE6-C7. C: PBK mRNA expression levels in 4 clinical pancreatic cancer samples and their paired normal tissues. ****P<0.0001. D: PBK mRNA expression levels in the normal pancreatic cell line HPDE6-C7 and 4 pancreatic cancer cell lines. *P<0.05 vs HPDE6-C7.
Fig.4 Prognostic value of PBK expression across 33 cancer types. A: Forest plot analysis of overall survival (OS) showing the prognostic value of PBK across various cancers. B: Forest plot analysis of disease-free survival (DFS) highlighting the potential impact of PBK in pancreatic cancer. C: Analysis of disease-specific survival (DSS) showing the ability of PBK for predicting disease-specific mortality. D: Progression-free survival (PFS) analysis further supports the role of PBK as a prognostic indicator.
Fig.5 PBK expression and its association with prognosis in pancreatic cancer. A: Kaplan-Meier survival curves show a significant association between high PBK expression and decreased OS. B: DFS survival curve validates the influence of PBK on disease-free survival. C: DSS survival curve highlights the relationship between high PBK expression and lower disease-specific survival. D: PFS survival curve reveals the connection between PBK expression and progression-free survival.
Fig.6 Univariate and multivariate analysis of the association of high PBK expression with prognosis of pancreatic cancer. A: Univariate analysis reveals significant association of PBK with clinicopathological factors of pancreatic cancer. B: Multivariate analysis validates PBK as an independent prognostic factor after adjusting for other clinical variables. C: A nomogram model for predicting survival probabilities of pancreatic cancer patients based on PBK expression. D: Calibration plot confirms the prediction accuracy of the nomogram model. E: ROC curves for 1-, 3-, and 5-year survival showing the predictive performance of PBK. *P<0.05, **P<0.01.
Fig.7 Gene correlation and enrichment analysis. A: Correlation analysis of PBK with 11 co-expressed genes across 33 cancer types. B: Intersection of PBK-related genes in pancreatic cancer, revealing key associated genes. C: GO analysis showing that PBK co-expressed genes are enriched in immune and cell cycle-related biological processes. D: KEGG pathway analysis shows that PBK is involved in cancer-related signaling pathways. E: GSEA analysis validates PBK-associated gene enrichment in immune regulation and tumor-related pathways.
Fig.8 PBK expression and tumor microenvironment analysis. A: Stromal Score analysis shows a correlation between PBK expression and tumor stromal content. B: Immune Score analysis indicates that PBK expression is associated with tumor immune infiltration. C: ESTIMATE Score analysis validates the role of PBK in the tumor microenvironment. D: Correlation between PBK expression and tumor mutation burden (TMB). E: Correlation between PBK expression and microsatellite instability (MSI), suggesting its potential immune regulatory mechanisms. *P<0.05, **P<0.01, ***P<0.001.
Fig.9 Relationship between PBK expression and immune system. A: Analysis of PBK expression and immune infiltration across 33 cancer types. B: Immune infiltration analysis of PBK in the pancreatic cancer immune microenvironment based on combined TCGA and GEO data. C: Correlation analysis of PBK expression with immune checkpoint molecules in 33 cancer types. D-F: Complex associations of PBK expression with MHC molecules (D), chemokines (E), and their receptors (F), suggesting its involvement in immune regulatory networks. *P<0.05, **P<0.01, ***P<0.001.
Fig.10 PBK expression and drug sensitivity analysis. A: Analysis from the CTRPC database shows that PBK mRNA expression affects drug sensitivity. B: Analysis from the GDSC database shows that PBK mRNA expression affects drug sensitivity. C: High PBK expression predicts poor response to gemcitabine treatment. D: High PBK expression is associated with chemotherapeutic drug resistance, indicating its potential as a drug target.
Fig.11 PBK knockdown inhibits proliferation, migration and invasion of pancreatic cancer cells. A: Western blotting showing efficient knockdown of PBK expression. B: Co-immunoprecipitation experiment shows that PBK directly interacts with NCAPG2, suggesting that the PBK-NCAPG2 axis plays a role in tumor progression. C: CCK-8 assay shows that PBK knockdown significantly inhibits cell proliferation. D: Transwell assay validating suppressed invasion ability of pancreatic cancer cells after PBK knockdown (Original magnification: ×200). E: Effect of shPBK on clone formation ability of pancreatic cancer cells. *P<0.05 vs shMock.
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