南方医科大学学报 ›› 2013, Vol. 33 ›› Issue (05): 724-.

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基于同源加尾系统的4种腹泻病毒的多重RT-PCR检测方法

滕勇勇,莫秋华,王琪,唐明慧,赵德坚,谭华,涂承宁,杨泽,陈清,孙虹   

  • 出版日期:2013-05-20 发布日期:2013-05-20

HAND system-based four multiplex RT-PCR for simultaneous detection of four diarrhea viruses

  • Online:2013-05-20 Published:2013-05-20

摘要: 目的针对轮状病毒、诺如病毒、星状病毒和扎如病毒四种常见腹泻病毒,建立基于同源加尾(Homo-Tag Assisted
Non-Dimer, HAND)系统的一步法四重RT-PCR检测方法。方法根据4种病毒基因组保守序列设计引物并在5’端加上同源尾
巴序列。通过优化通用尾巴引物和特异性加尾引物的浓度等PCR参数构建四重RT-PCR反应体系,并系统评价其稳定性、特异
性和灵敏度。结果成功建立基于HAND系统的4种腹泻病毒一步法多重RT-PCR检测方法。特异性分析显示四种病毒间无交
叉反应,灵敏度分析显示轮状病毒、诺如病毒、星状病毒和扎如病毒的检测下限分别达到48、9.6、1.92和48 pg。结论所建立的
基于HAND系统的4种腹泻病毒多重RT-PCR检测方法简便快速、灵敏特异稳定、成本低廉,非常适用于基层医学实验室。

Abstract: Objective To establish a one-step four multiplex reverse transcription polymerase chain reaction (RT-PCR) method
based on Homo-Tag Assisted Non-Dimer System (HAND) system for simultaneous detection of 4 diarrhea viruses of
rotavirus, astrovirus, norovirus and sapovirus. Methods Primers were designed according to the conserved genome sequence
of the 4 viruses and the homologous tail sequences were added to the 5’ end. The multiplex RT-PCR system was constructed
by optimizing the PCR parameters such as the concentration of universal tag primer and genome-specific Homo-Tailed
primers. The specificity, stability and sensitivity of the method were evaluated systematically. Results The 4 multiplex RT-PCR
methods based on HAND system was established successfully. Specificity analysis showed no cross reaction between the 4
diarrhea viruses. The sensitivity analysis showed detection limits for rotavirus, astrovirus, norovirus and sapovirus of 48, 1.92,
9.6 and 48 pg per reaction, respectively. Conclusion The established HAND system-based multiplex RT-PCR assay allows
simple, rapid, specific, sensitive, and stable for detection of the 4 common diarrhea viruses at low costs and is suitable for
application in general medical laboratories.