Journal of Southern Medical University ›› 2015, Vol. 35 ›› Issue (12): 1775-.
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Abstract: Objective To screen the genes related with leukocyte responses in mice early after burn injury by bioinformaticanalysis of the gene expression profiling data. Methods Gene expression profiles were obtained from GEO (GSE7404, Mousemusculus, 25% TBSA, full-thickness) database. After screening of the differentially expressed genes (DEGs) throughpaired-sample t-test and fold-change, DAVID online tools were used to select the DEGs related to leukocyte responses to burnsby GO functional enrichment analysis; the interacting genes identified through KEGG pathway enrichment analysis weretransferred to STRING to construct the protein-protein interaction (PPI) network. Biological annotation of the sub-networkswas executed using the software Cytoscape. Real-time PCR was used to verify the DEGs identified in mice. Results Of the 259leukocyte response-related DEGs screened at 1 day post-burn, 118 were up-regulated and 141 were down-regulated. KEGGpathway enrichment analysis showed that the pathways were associated with the immune function, cell growth and cell death.PPI network and module analysis suggested that some of genes (such as Lck, Stat1, Myd88, Stat3, and Jun) play critical roles inthe PPI network post-burn. RT-PCR results were consistent with those of bioinformatic analysis. Conclusion Lck, Stat1, Myd88,Stat3, and Jun might be critical players in the development of leukocyte response in mice early after burn injury. Our findingprovides new insights into the pathogenesis of leukocyte response to burn injury and identifies several potential biomarkersfor burn treatment.
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https://www.j-smu.com/EN/Y2015/V35/I12/1775