Journal of Southern Medical University ›› 2015, Vol. 35 ›› Issue (12): 1775-.

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Screening genes related with leukocyte responses early after burn injury: analysis of
differentially gene expression profiling data in mice

  

  • Online:2015-12-20 Published:2015-12-20

Abstract: Objective To screen the genes related with leukocyte responses in mice early after burn injury by bioinformatic
analysis of the gene expression profiling data. Methods Gene expression profiles were obtained from GEO (GSE7404, Mouse
musculus, 25% TBSA, full-thickness) database. After screening of the differentially expressed genes (DEGs) through
paired-sample t-test and fold-change, DAVID online tools were used to select the DEGs related to leukocyte responses to burns
by GO functional enrichment analysis; the interacting genes identified through KEGG pathway enrichment analysis were
transferred to STRING to construct the protein-protein interaction (PPI) network. Biological annotation of the sub-networks
was executed using the software Cytoscape. Real-time PCR was used to verify the DEGs identified in mice. Results Of the 259
leukocyte response-related DEGs screened at 1 day post-burn, 118 were up-regulated and 141 were down-regulated. KEGG
pathway enrichment analysis showed that the pathways were associated with the immune function, cell growth and cell death.
PPI network and module analysis suggested that some of genes (such as Lck, Stat1, Myd88, Stat3, and Jun) play critical roles in
the PPI network post-burn. RT-PCR results were consistent with those of bioinformatic analysis. Conclusion Lck, Stat1, Myd88,
Stat3, and Jun might be critical players in the development of leukocyte response in mice early after burn injury. Our finding
provides new insights into the pathogenesis of leukocyte response to burn injury and identifies several potential biomarkers
for burn treatment.